Filipe G. Vieira
Filipe G. Vieira
I've been a bit busy, but will try to turn these schedulers as plugins.
@johanneskoester managed to make a first version of the scheduler plugin at [fgvieira/snakemake-scheduler-plugin-firstfit](https://github.com/fgvieira/snakemake-scheduler-plugin-firstfit). Let me know if you have any suggestions.
Closing as this has been re-implemented as a plugin [snakemake-scheduler-plugin-firstfit](https://github.com/snakemake/snakemake-scheduler-plugin-firstfit)
Yes, the idea would be to remove the ones with ow complexity.
Finding low-complexity region would be a nice feature, but it would be more complicated to implement and not sure how useful it would actually be (would you throw away the...
Hi @mschecht and thanks for your interest in snakemake wrappers! As far as I can see, there is an outdated version of cellranger in [conda](https://anaconda.org/hcc/cellranger), but the code seems to...
I think it would be great to have a wrapper for cell Ranger! If I understand you correctly, it is possible to have it on bioconda, no? If so, I'd...
@SilasK Can you add a local test?
Has this been fixed on version `4.4.0.0`?
If it is a matter of choosing what GATK version to use, the user can just use an older wrapper version, no?