Francesco Gualdrini

input staging of files/path symlink issue

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Hi! I'm having issues with Nextflow staging symlinks. Is there a way to remove disallow Nextflow to follow the input symlinks and treat them as files? In the institute we...

Hi!, I'm having issues figuring out a bug within my code. While I produce a file_pair channel using the Channel.fromFilePairs al follow: "ch_fastq_file_path = Channel.fromFilePairs( params.fastq_file_path + '/*.R{1,2}.fastq.gz',checkIfExists:true) " When...

Hi, I am trying to use generation and in particular the ScoreMatrix/ScoreMatrixList function to retrieve signal per base over windows in Granges object with targets BedGraph files. I know, and...

nextflow.script.ScriptBinding.check_max()

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### Description of the bug Hello, I am trying to run the workflow but this issue occurs: I don't understand what the line "No signature of method: nextflow.script.ScriptBinding.check_max() is applicable...

Hi!, I am trying to implement crispulator to generate RAW data and test/compare CRISPR tools. I am trying to figure out few things: 1) how to generate experiment replicates -...

error after updating and committing to master

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I get this error after updating and committing to master WARNING: Hard-coding image build instead of using Conda build - this is not recommended. https://github.com/BioContainers/multi-package-containers/actions/runs/4218095412/jobs/7322346121#step:8:77 ls: cannot access 'singularity_import': No...

Hi I'm trying to install ParetoTI within a condo environment with its R installation - I don't want to use the base path R. Could I ask which R version...