feixiang1209

I had same issue, and posted here as well. Also got no reply.

Thanks for your reply, I tried to run mmseqs nrtotaxmapping after “mmseqs createtaxdb nrDB tmp --ncbi-tax-dump ./taxdump/ --tax-mapping-file ./prot.accession2taxid” using command "mmseqs nrtotaxmapping accession2taxid/prot.accession2taxid nrDB output.tsv". The output.tsv is as...

Thanks a lot @AndrazMarinc and @milot-mirdita . It worked. Also I found another solution, the file "prot.accession2taxid" download from NCBI needs modification. Only two columns (accession.version and taxid) are needed...

What i did was (1) Downloaded gtdb_genomes_reps.tar.gz and then combined all the fa files into one fa file. (2) downloaded ar53_taxonomy.tsv and bac120_taxonomy.tsv, also combined them into one tsv. (3)...

Thanks a lot. We are downloading the database. There is another issue, please see below error message. It seems there is a time limit for some steps. Could you please...

I tried to create a config file but it seems the pipeline didn't take it( configFiles : ). Coud you please advise? (env_nf) diazrur@KW60867:~/Documents/Aramco_metagenomes$ nextflow run nf-core/mag --input metadata.csv --outdir...

[logs.zip](https://github.com/nf-core/mag/files/13828895/logs.zip) Please find attached all the log files as well as the config file we used. Thanks for your help.

Hi I used below command to resume a run. I created the "custom.txt " to increase time, memory and cpus. However, the pipeline didn't take custom config. Please find attached...

I already uploaded but I will upload here again. Thanks a lot [custom.txt](https://github.com/nf-core/mag/files/13902280/custom.txt)