Friederike (Freddie) Ehrhart comments

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                                            Friederike (Freddie) Ehrhart

have GdbConstructImpl3.createGdbIndices() report what it's doing when Exceptions happen internally

Interesting... It should not be the size of the total file, Exonic collection is bigger and that went through. If it is variant length, there should be a script that...

have GdbConstructImpl3.createGdbIndices() report what it's doing when Exceptions happen internally

Tried the whole thing again - whole process from downloading vcf variation files from ensembl until variantCreator. Same error... Help!

have GdbConstructImpl3.createGdbIndices() report what it's doing when Exceptions happen internally

Is this issue still relevant? @egonw

Disease BridgeDb

Update from disease mapping demonstrator telcon today: DisGeNET or Wikidata were not mentioned yet, but there are several EBI/Orphanet attempts we could possibly use as data resources, too. Ontology Xref...

"endpoint measured by assay" statements

Yes, possible IF you include that some endpoints can be measured by multiple assays and vice versa. Depends also on the detailedness of the assay or endpoint. E.g. LDH assay...

NM_001005 describes both particle size and zeta potential

close?

Linking particles to molecular entities

close?

Recommended methods for measurement of particular property

It is not possible to link ontology terms from different sources (e.g. NPO and CHEBI) in ENM. As far as I understood (thanks to Gareths explanation) as soon as the...