Fernanda Fossa

**Is your feature request related to a problem? Please describe.** Running RunCellpose with a custom model, and changing the model from the previously defined folder, doesn't warn you that the...

RunDeepProfiler doesn't run in analysis mode on Windows, only on mac

3

Probably related to #19 So far RunDeepProfiler only ran on Windows using the test mode. On Mac, it works fine on both test and analysis modes and outputs the extracted...

New plugin/module idea is to have a module that saves one representative cropped cell for each site. Beth's suggestion is: - [ ] Use SaveCropObjects code to implement this plugin...

Collate and SingleCells to accept less/different compartments

1

# Description I'm proposing these changes to Collate and SingleCells for those to accept different numbers of cell compartments or even just one compartment. Related to issue #272 ### This...

Collate.py fails with less number of compartments

4

# Issue: not having all compartments affects SingleCells and collate.py Sometimes we don't have all the compartments in an assay, for example having only stained the cells with a dye,...

Normalization of Location columns by pycytominer.normalize

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When trying to normalize a dataframe, I noticed that pycytominer.normalize is acting on all the _Location_Center_X and Y columns (which are associated with objects' locations). The following code gives me...