Federico Marini

Hi @J-Lye , it is definitely because of the 136 samples. This is implemented with the `pairs` function, my guess is that this does not digest that well such large...

Hi Guido, not a naive question at all! Let's say that most such explorations do require something that recalls a homoscedastic-like dataset. And that'd be the `dst` object. Well, if...

Hi @mars188, I see you refer to a similar issue in https://github.com/federicomarini/pcaExplorer/issues/14 From the description above, I cannot really extrapolate the requirements about how the whole analysis should be set...

Hi @Justin1609, did you try to see if the files are in the csv format - despite of the extension, sometimes Excel might not really be comma-delimited. You can do...

> Hi there Federico Thanks so much, I managed to get it sorted out. I didn't realize that you don't have to transpose the count matrix before inputting it. Why...

> Hi Federico Could you also please tell me how I can edit the title and the legend name of the plot? And I would like to remove the sample...

No problem, I am aware we in bioinformatics are doing things by default in a transposed way 😉 If you transpose it: well, in the end you do change the...

Hi @jamesthomas232, I cannot see too much from the screenshot, nor you did provide enough info to get a grasp of the dataset at hand. Can you elaborate more on...

Thanks for the larger screenshot, this way I can have a cleaner look at it. Hm, strange, it looks like it is not able to pick the values of the...

Hm, ok, this is somehow tricky then. Can you check that the factors are encoded as such (if you are providing the data as dds/transformed)? Or otherwise: can you provide...