Federico Marini

Good catch. Fix is coming in soon! Thanks for the kind words too - and for the suggestion 😉

Pro: - cool thingies and all Con: - extra dependencies Compromise: this is a ggplot heatmap, maybe something with ggplotly?

Hi Marco, this is a bit odd. Can you check a bit more the content of your dds object? For example, what is the printout of ``` dds rowData(dds) ```...

Hi Richard @rb643 , You can see from the source code itself that my js-fu is also not so optimal. The solution I took is inspired by the answer I...

Hi Anita, Please make sure that there are no NAs in the input data for the DESeq result object. I recall that having some there could lead to a specific...

Can you post the output of `sessionInfo`? It can be that there is an older version of `backbone` installed and that is not compatible with the newer GeneTonic. Try reinstalling...

Well, probably the best option is to work with a more recent of R/Bioc/GeneTonic itself. This would make sure you are with the newest features, and the setup works.

Pro: * cool thingies and all Con: * extra dependencies Compromise: some kind of selector which (automatically) includes all samples by default, and gives the option to remove them on...

Hi @gurpreet-bioinfo , At the moment multiple gene(set) lists can be handled in the functions defined in https://github.com/federicomarini/GeneTonic/blob/master/R/gs_summaries.R - `gs_summary_overview_pair()` and `gs_horizon()` might be a good place to look into....

Hi Lucas, I also encountered this issue every now and then - I could trace it back to some weird behavior of the `pheatmap` generated plots. I know it sounds...