Forrest Collman

geometery_colors, other properties not working when passed

3

On my installlations (and on binder right now), passing some initial settings for rendering do not work. For example, passing geometry_colors=['g'] does not cause the Mesh example to initially render...

June 2011: In one specific case, a user recorded data with a recording protocol that may have been set up originally with pClamp 9.x. In this protocol, amplification of the...

(see variable UserListSec)

Placeholder resolutions

12

When users try to go from neuroglancer>cloudvolume with flywire they are tempted to use naive code like this ``` im_cv= cloudvolume.CloudVolume('precomputed://https://bossdb-open-data.s3.amazonaws.com/flywire/fafbv14') ``` but this will give them a 4,4,40 mip...

This will remove vtk from the base installation

Resample

4

This adds a function to resample skeletons (while dropping non root connected components)

AnnotatedMesh object

1

During the course, it became clear how often and students want to apply masks to meshes and then reference synapses and or skeletons. One idea to support these use cases...