pavian
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fbreitwieser
🌈 Interactive analysis of metagenomics data
Hi fbreitwieser ,The web site https://fbreitwieser.shinyapps.io/pavian/ can not support krakenuniq --report-file .Or i missed something. The formats are as follows. % reads taxReads kmers dup cov taxID rank taxName 76.28...
Hi there, less an issue, more a feature request/ query. Is it possible to feed pavian kreports on the commandline so you dont have to use the GUI to browse...
Hello, I have a data set consisting of 64 Kraken2 .report files and 1 sample_data.csv file. Each file can be uploaded successfully in its individual form, but when I try...
Thanks for this great tool! However, it would be quite useful to have the option to plot the "% of the reads", in addition to the already present "number of...
Dear developers! Thank you for really useful app! Everything is working well, but not "Number of reads across all samples" (error is: **factor level [7] is duplicated**). I am using...
The instructions say "Upload metagenomics report files from the local computer. If selecting multiple files does not work, please try with a different browser. With each sample set, you may...
Hi, When I am loading my kraken report file in the following error comes and the session gets closed. However, the same file is working well with docker instance. >...
Hi @fbreitwieser, I got a request from one of your users to use Pavian with profiles from [mOTUs2](https://github.com/motu-tool/mOTUs_v2). See [mOTUs_issue_27](https://github.com/motu-tool/mOTUs_v2/issues/27). Pavian seems a great tool and I would also like...
Dear Pavian developers, I am facing some issues while trying to install the tool. Inside R v3.5.1 I am running: `remotes::install_github("fbreitwieser/pavian", force=TRUE)` These are the error messages I get: >...
