Fabian Rost

Support coloring by boolean variables

14

- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [ ]...

Development install via conda does not work

3

- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [x] (optional)...

corrected link for continuous covariates link, typo correction

Download as "HTML with toc" does not work

2

I am trying to export a jupyter notebook as an html with the table of contents. For that I want to use the "Table of contents (2)" extension. It used...

Today, I realized a problem with HTO demultiplexing in bfx1875. When running the snakemake workflow on our cluster, HTO demultiplexing crashes on one of the samples. It crashes when calling...

add n_top_genes argument to rank_genes_groups_df

1

This PR addresses https://scanpy.discourse.group/t/workflow-for-selecting-number-of-marker-genes-in-sc-queries-enrich/286 I wanted to have a simple interface to get the top n marker genes. Right now, `rank_genes_groups_df` only allows to threshold on logfc and pval, but...

There is an example samplesheet in the README.md: https://github.com/nf-core/methylseq/blob/54f823e102ef3d04077cc091a5ae435519f9923a/README.md?plain=1#L53-L57 I wonder whether there is a typo line 56, because states `SRR389222_sub2` as sample, but the file name contains `SRR389222_sub3`. Also,...

I noticed this in the automatically created `sc.h5ad` of `bfx2236`

Raumfeld speaker refuses to play stream - Unregistered stream message

48

I fail to stream audio to my Raumfeld speaker. It used to work before (like half a year ago). Starting `pulseaudio-dlna` the output is: ``` fabian@fabian-ThinkPad-X250:~$ pulseaudio-dlna 07-09 22:47:20 pulseaudio_dlna.application...