Fabian Rost

I get the same warning when I load ipycache using `%load_ext ipycache` in Jupyter notebooks. I have IPython 4.1.2 and Jupyter 4.2.0 installed.

Thanks @ChengdaoYang , but I already installed jupyter-contrib-nbextensions according to the instructions.

I came across this when I wanted to plot the predicted doublets from scrublet. `predicted_doublet` is stored as boolean. So, I would like to have this plotted like a categorical....

Thanks. I tried this as well. The problem that I had was that going back to a Boolean for subsetting was not easy: ```python adata.obs['boolean'] = adata.obs['boolean'].astype(str).astype('category') adata[adata.obs['boolean'].astype(bool)] ``` This...

Thanks. Agreed. This is a workaround for sure.

seems like the `--deps` flag can be used to select dependencies. Default is all dependencies. ```bash $ beni --deps production pyproject.toml channels: - conda-forge dependencies: - pip: - flit -...

and `beni` makes use of these name mappings: https://raw.githubusercontent.com/regro/cf-graph-countyfair/master/mappings/pypi/name_mapping.yaml and there it is: ``` - conda_name: seaborn-split import_name: seaborn mapping_source: regro-bot pypi_name: seaborn ``` so, this seems to be an...

I ran into the same error. Minimal example to reproduce: ```python import mnnpy import scanpy.api as sc sc.logging.print_versions() adata1 = sc.datasets.blobs() adata2 = sc.datasets.blobs() mnnpy.mnn_correct(adata1, adata2, cos_norm_out=False) ``` When lookiing...

I do not see an issue with disk storage, everywhere I look, there seems to be plenty of space. However, I did realise the following: It seems to work when...

Just wanted to add that running things in my home directory is not an option, because there I do not have enough space. I also talked to our admin and...