fan040

Results 8 issues of fan040

This is my command line, I don't know what's wrong, I just want to count the values of snpindex greater than 0.8, and I want to graph them. sbatch -p...

### Description of the bug Hello, this is my error message, it says that the field Settings are not uniform, I would like to ask how to adjust the parameter...

bug

### Description of the bug I currently have an error that my reference genome is about 14Gb, causing my bed file to be too large to establish tbi index, I...

bug

### Description of feature ![image](https://github.com/nf-core/sarek/assets/166574153/9a893a26-d421-4725-833c-197342f1484c) ![image](https://github.com/nf-core/sarek/assets/166574153/acb5cacf-11af-4ce3-bb0a-9c40113689c4) I would like to ask, will setting this parameter cause my cpus to double as well, and if so, how should I set it...

enhancement

### Description of feature Hello, I would like to ask whether it is possible to realize that if the fastq file of the sample is wrong, the sample can be...

enhancement

### Description of the bug hi,i find ``` process > NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_JOINT_CALLING_GERMLINE_GATK:GATK4_GENOTYPEGVCFS (joint_variant_calling)" going wrong. I checked the log file , Sample/Callset D_D900002( TileDB row idx 0) at Chromosome chr4D_part1 position...

bug
moreinfo

Hello, I use snpeff and bcftools two software to calculate the mutation type, but the output results are very different, I would like to ask why? What's the difference between...

### Description of the bug i don not know why there are such errors ### Command used and terminal output ``` Caused by: Process `NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (AK58_C_1)` terminated for an unknown...

question