sarek
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Region 536904516..536917009 cannot be stored in a tbi index
Description of the bug
I currently have an error that my reference genome is about 14Gb, causing my bed file to be too large to establish tbi index, I would like to know how to modify it to establish csi index, thank you for your help.
Command used and terminal output
Command error:
INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
[E::hts_idx_check_range] Region 536904516..536917009 cannot be stored in a tbi index. Try using a csi index
tbx_index_build failed: up_down_2k_promoters.all.bed.gz
Work dir:
/cluster/home/fanrong/work_lei/BSA/02_ZS/02_mapping_1/work/f9/901b8ac1827e6196b65b21ba97e017
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
-- Check '.nextflow.log' file for details
Relevant files
No response
System information
No response