Famke Bäuerle

Results 262 comments of Famke Bäuerle

Unfortunately I get ```bash java.lang.OutOfMemoryError: Required array size too large ``` when I try to use the downloadtaxonomy module (see PR #7423). I asked if there is a way to...

There is downsampled test data available in the test-datasets repository. Unfortunately I run into the following error: ```bash │ Command executed: │ │ │ │ if [ "false" == "true"...

Seems like the versions.yml is different for the conda package (there `null` is returned as version which is obviously wrong). But when I test it locally it works fine and...

```bash nf-core modules test crabs/dbimport --profile conda [12:58PM] ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __ / ` / \ |__) |__ } { | \| |...

@fellen31 The problem seems to persist. Locally I get the version as shown in my terminal output but in the CI the version is reported as `null`.

This is what I get on codespaces: ```bash (nf-core) gitpod /workspaces/modules (crabs-2) $ nf-core modules test crabs/import --profile conda ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __...

Results from codespaces: ```bash (nf-core) gitpod /workspaces/modules (crabs-2) $ nf-test test modules/nf-core/crabs/import/tests/main.nf.test --update-snapshot --profile conda Picked up JAVA_TOOL_OPTIONS: 🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian...

@gjeunen Do you maybe have an idea why accessing the version via conda fails in our CI? 😢

Small bump on this PR (spring cleaning)! @edmundmiller Maybe this can be closed?

run `nf-core modules test toulligqc -u` on your local branch and push the changes please :)