Famke Bäuerle

I recently got this problem as well. It worked fine a couple of months ago.

Hi @zoey-rw :) I also got into automated charge and mass correction. I found that the most tedious part is comparing entries in different databases and then the decision which...

Thank you for the input. That is certainly the case. I am just wondering how this can be made a bit more transparent when looking at different models. For now,...

I have a similar issue where I give my correct github username while creating the repository via `memote new` but as soon as I try to run `memote online` it...

It seems to me that my issue ( #721) corresponds to this discussion aswell. Would it make sense to use libSBML to access the SBO tree? If I recall correctly,...

I commented the difference between JSBML and libSBML implementation of the SBO class on their GitHub: Implementation of SBO term trees Issue number 164 ([#164](https://github.com/opencobra/memote/issues/732)). Maybe that helps.

Here is the complete `tree` with all folders: [tree.txt](https://github.com/nf-core/sarek/files/14195784/tree.txt) And here is the part without the work folder: ```bash . |-- params.json |-- results | |-- annotation | | |--...

I added the `--threads` in [nf-core/modules PR #5371](https://github.com/nf-core/modules/pull/5371).

I also ran into this when trying to evaluate the vcfs with `rtg vcfeval`. I used the following command: ```bash rtg vcfeval --threads 12 --ref-overlap --all-records --output-mode ga4gh --baseline results/variants/imgag-somatic-10perc.truth.cov-medium.vcf.gz...

I observed the same error. Are there any news? I would really like to use the github addon!