nf-LO

nf-LO copied to clipboard

Attempt fixing of minimap2 runner

RenzoTale88

Issue regarding 'nextflow run evotools/nf-LO'

1

Hello, thank you for developing this tool, I tried to run the following code : `nextflow run evotools/nf-LO --source /home/sealight1999/references/GRCH38/GRCh38_no_alt.fna --target /home/sealight1999/references/CHM13/ chm13v2.0_1.fa --aligner minimap2 –outdir /home/sealight1999/references -profile local` But...

Heather1999

minimap2: Stdin is empty

15

Hi, I'm running nf-LO between hg38 and pantro6 using the minimap2 preset. The docker container used was built as suggested in the docs. I'm running this on a SLURM cluster...

vpeddu