nf-LO
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Issue regarding 'nextflow run evotools/nf-LO'
Hello, thank you for developing this tool, I tried to run the following code :
nextflow run evotools/nf-LO --source /home/sealight1999/references/GRCH38/GRCh38_no_alt.fna --target /home/sealight1999/references/CHM13/ chm13v2.0_1.fa --aligner minimap2 –outdir /home/sealight1999/references -profile local
But encountered following warnings:
[c3/9fda46] NOTE: Process PREPROC:tgt2bit (tgt2Bit)
terminated with an error exit status (127) -- Execution is retried (1)
[ae/47e4dc] NOTE: Process PREPROC:splitsrc (splitsrc)
terminated with an error exit status (127) -- Execution is retried (1)
[e7/fdb913] NOTE: Process PREPROC:src2bit (src2Bit)
terminated with an error exit status (127) -- Execution is retried (1)
[fd/3eadf0] NOTE: Process PREPROC:splittgt (splittgt)
terminated with an error exit status (127) -- Execution is retried (1)
[03/acbfe7] NOTE: Process PREPROC:tgt2bit (tgt2Bit)
terminated with an error exit status (127) -- Execution is retried (2)
[8e/ecf45f] NOTE: Process PREPROC:splitsrc (splitsrc)
terminated with an error exit status (127) -- Execution is retried (2)
[22/e11aa5] NOTE: Process PREPROC:src2bit (src2Bit)
terminated with an error exit status (127) -- Execution is retried (2)
[62/97c512] NOTE: Process PREPROC:splittgt (splittgt)
terminated with an error exit status (127) -- Execution is retried (2)
[83/bd21fa] NOTE: Process PREPROC:tgt2bit (tgt2Bit)
terminated with an error exit status (127) -- Error is ignored
[3f/930365] NOTE: Process PREPROC:splitsrc (splitsrc)
terminated with an error exit status (127) -- Error is ignored
[9e/fdca06] NOTE: Process PREPROC:src2bit (src2Bit)
terminated with an error exit status (127) -- Error is ignored
[77/94ba10] NOTE: Process PREPROC:splittgt (splittgt)
terminated with an error exit status (127) -- Error is ignored
WARN: Graphviz is required to render the execution DAG in the given format -- See http://www.graphviz.org for more info.
What could be wrong? Thank you!