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evolutionaryscale
Hello, ESMC obviously has very good general protein representations, but it seems to fail the most basic reconstruction task of returning the input sequence. Is this expected? ```python from esm.models.esmc...
Small change to expose pae in ESMProtein when you decode the structure.
Hi, I find the huggingface interface quite useful to simplify my codebase and quickly switch between different models. I was wondering if you had any plans for creating an official...
Hi, Thank you for changing the license of ESM-C! I want to ask if it is possible to launch an ESM-C jupyter to provide some examples and introductions. I saw...
ESMprotein.to_pdb saves 1 for all b_factor would it be possible to save it in the b_factor track?
I'm using the ESM Cambrian 6B model via Sagemaker to embed proteins using (in part) the following code: ``` client = ESM3SageMakerClient(endpoint_name=endpoint_name, model=model_name) config = LogitsConfig(sequence=True, return_embeddings=True) seq = "AAAAA"...
When using the latest version of esmc (esmc==3.2.0), the code "model = ESMC.from_pretrained("esmc_300m")" throws the following error: AttributeError: property 'cls_token' of 'EsmSequenceTokenizer' object has no setter. Currently, there appears to...
When using ESMC to generate embeddings, two additional tokens are added. Suppose the input sequence has length “seq_len” , then the shape of the embedding generated by ESMC is (1,...
When running ESM models on CPU with flash_attn installed, inference fails with CUDA-related errors despite explicitly setting the device to CPU. **Steps to reproduce:** On a CPU machine with flash-attention...
Hi，now i want to use esm3 to design protein only based on key words or ss or combination of them. i want to know how use it？
