Etienne Danis

icon company University of Colorado, Denver - Anschutz Medical Campus icon location Denver icon location I love data science!!!!

Results 3 issues of Etienne Danis

Question about the read filtering by bamQC

1 comment

Hi Jianhong, Besides the reads with low alignment scores, the reads derived from mitochondrial DNA and the PCR/optical duplicates, are there any other filters applied by bamQC? What are the...

Question about bamQC

1 comment

Hi Jianhong, Thank you again so much for creating ATACseqQC! To get the report of all the QC metrics with bamQC, it looks like I should use: **bamQC(bamFile, outPath =...

Bug report [BUG] AttributeError: module 'numpy' has no attribute 'int' group_pr.to_bigwig

2 comment

Hi Seppe, Thank you so much for fixing Scenic+! I'm still having an issue with pycisTopic. For both the human cerebellum and the pbmc tutorials, when I run: ``` from...