nanoq
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esteinig
Minimal but speedy quality control for nanopore reads in Rust :bear:
Plotting is not in line with the minimal design approach of `nanoq`, but it may be useful to have access to per-read length and quality data.
dear developer after using -vvv in the command line I am getting the below results Read quality thresholds (Q) > 5 66929 100.0% > 7 66049 98.7% > 10 19683...
Auto detection of compression when writing to `stdout` is currently not implemented. It can be activated when specifying the `--output-type|-O` argument. It would be better for consistency to enable auto...
At the moment empty files error due to `needletail` - implement a flag that allows for zero outputs
Requested by @mbhall88 - [ ] Remove reads with > x % ambiguous bases - [ ] Command line option for filter and allowed bases - [ ] Speed optimisation...
Hi, I encounter an error when running nanoq on multiple fastq.gz files (from one barcode) with their generic Nanopore names, it usually tells me that file *_10.fastq.gz isn't valid in...
Dear community I got the full report for read length and quality using the following command lines nanoq -i my_file.fastq -s -Q report_quality.txt nanoq -i my_file.fastq -s -L report_length.txt I...