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Published 20 hours ago • verified publisher icon esteinig

Ambiguous base filter

Open esteinig opened this issue 1 year ago • 2 comments

Requested by @mbhall88

  • [ ] Remove reads with > x % ambiguous bases
  • [ ] Command line option for filter and allowed bases
  • [ ] Speed optimisation [will have to have a look]
  • [ ] Tests

esteinig avatar Jul 14 '23 02:07 esteinig

In the meantime, Wei Shen is awesome and there is (of course) a way to do this with seqkit https://github.com/shenwei356/seqkit/issues/403

mbhall88 avatar Aug 02 '23 03:08 mbhall88

Love Wei Shen's work - and of course it was available ^^ I'll flag this for the next version.

There should be a fast way of doing this using the &[u8] sequence from a needletail record.

esteinig avatar Aug 05 '23 23:08 esteinig