Enrico Seiler
Enrico Seiler
> The use of kmtricks to generate indexes was originally intended for collections (hundreds or thousands) of large sequencing samples (like Tara metagenomes). Unfortunately, there is a known issue when...
> 1. How do I test whether a BAM record has a given tag? The tag_dictionary is a std::map, so you can use the things like `contains()`. ```cpp #include using...
So, for example, when you have a tag `XX` as integer, write a BAM file; then the type of `XX`, and read the BAM file? Or there just happens to...
Here's a godbolt link showing both versions: https://godbolt.org/z/q6dMYajef
We now support clang 17 on the master branch (via https://github.com/seqan/seqan3/pull/3195).
Dear @kbipinkumar, Thanks for reaching out! It is possible to use a packaged version, but the version needs to be 3.0.1, which is available here: https://github.com/xxsds/sdsl-lite The packaged debian version...
> I can reproduce this. There seems to be an error with seqan3 3.2.0 release. Looking at the cmake documentation, I am not sure why it is working on the...
The bgzf handling is built around using a threadpool, so it always spawns at least one thread. It should be possible to use the constructor via stream for the input....
> This seems to me like a recurring issue and I am wondering if the mechanism to switch to gz-decompression in favor of bgzf-compression should be more straightforward to handle...
Thanks a lot! Can you also add a to-do list with stuff that still must/needs/should be done regarding the code?