Enrico Seiler

I have good news and bad news: * **Good**: I found the actual bug that resolves the two bugs in my minimal example post :) * **Bad**: Rye still crashes...

#2521 should fix the assertions. If not, just reopen this issue.

This also happens on current main. This assert fails https://github.com/seqan/seqan/blob/578218d744522c43bc9e769f14be9c26d7e5de85/include/seqan/seeds/banded_chain_alignment_traceback.h#L201 ```cpp #include #include #include using TSeed = seqan2::Seed; using TSeedSet = seqan2::SeedSet; using TIterator = seqan2::Iterator::Type; using kmer_t = unsigned...

Hey @mchaisso Thanks for reporting! Can you try using ```cpp result = bandedChainAlignment(alignment, chain, scoringScheme, scoringScheme, alignConfig, 2); ``` instead of ```cpp result = bandedChainAlignment(alignment, chain, scoringScheme, scoringScheme, alignConfig); ```...

Hey there, We had a similar issue in #3271. Since your alphabet type would fit in a `char16_t`, it should be possible to modify `alphabet_variant` to allow for this. I...

When I apply this patch Click to show ```patch diff --git a/include/seqan3/alphabet/composite/alphabet_variant.hpp b/include/seqan3/alphabet/composite/alphabet_variant.hpp index 82b035a99..df411d921 100644 --- a/include/seqan3/alphabet/composite/alphabet_variant.hpp +++ b/include/seqan3/alphabet/composite/alphabet_variant.hpp @@ -121,18 +121,22 @@ template requires (detail::writable_constexpr_alphabet && ...) &&...

Hey there, Sorry for not getting back to you sooner. Can you tell me what version of Clang/Xcode you are using? For Clang, you can usually run `clang --version` in...

> ``` > % clang --version > Homebrew clang version 18.1.8 > Target: arm64-apple-darwin23.1.0 > Thread model: posix > InstalledDir: /opt/homebrew/opt/llvm/bin > ``` This version should work. As for M1...

According to https://en.wikipedia.org/wiki/Xcode#Xcode_15.0_-_(since_visionOS_support)_2, XCode 16.0 would be the first version that ships with llvm 17. In prior versions, XCode must be convinced to use Homebrew's llvm-clang. I haven't managed to...

Hey there, the documentation links should work again. As for the error, try using `raptor layout` instead of `chopper`. `raptor layout` is basically the compatible chopper version shipped with raptor....