Enrico Seiler
Enrico Seiler
Superseded by #3065
> @Irallia Could you point them to the bam index library of Josh you are using in IgenVar? https://github.com/joshuak94/BAMIntervalTree
~~Blocked by https://github.com/seqan/seqan3/pull/3037~~
I noticed some improvement: ``` Benchmark Before[M/s] After[M/s] ------------------------------------------------------------- fastq_read_from_stream_seqan3/100 415.09 456.501 fastq_read_from_stream_seqan3/1000 409.358 473.763 fastq_read_from_stream_seqan3/10000 410.244 464.949 fastq_read_from_disk_seqan3/100 191.171 203.07 fastq_read_from_disk_seqan3/1000 263.259 316.307 fastq_read_from_disk_seqan3/10000 282.857 334.441 ``` I did...
Depending on the use case, it's almost 20%, no?
Currently, this issue is blocking: https://github.com/llvm/llvm-project/issues/56394
We merged https://github.com/seqan/seqan3/pull/3026 which adds an example for an auto-vectorizable dna4 alphabet and improves the performance of the dna4-complement and also adds a benchmark. Thanks again a lot for your...
Mason seems to open a file handle for each fragment. The default limit is usually `1024` (`ulimit -Sn`). If I increase my limit to `1048576` (`ulimit -Sn 1048576`, you can...
We are currently using 5.2 and it works again
> But in version v1.2.1 the subcommand `index` does not exist (only `[pipeline|dump|aggregate|infos]`). The subcommand `query` also does not seem to exist. I didn't set some options when building, I...