Eric Earl
Eric Earl
@effigies Is [that comment just above here](https://github.com/bids-standard/bids-examples/pull/465#issuecomment-2640990645) a note for me? I'm confused by most of it and don't feel safe editing those files as-is. If you need me to...
This is super-helpful @effigies, thank you! I'm bringing the errors out of the logs here for us (@Arshitha @SamGuay @surchs): ``` # pheno001 [ERROR] MISSING_DATASET_DESCRIPTION A dataset_description.json file is required...
We need a couple more things: 1. The bids-validator needs to be able to manage optional columns in the initial_columns list 2. We need to try to trigger all of...
> can we add "phenotypic" or "pheno" in this PR title so that at a glance it's clear 🙏 @ericearl Title changed. Thanks for the suggestion!
Awesome! Thanks @raamana ! And good advice to just pull the ratings from the terminal if you have to (for now)... Good luck making that fix. If you don't want...
Another small discovery: when I remove the first "volume" by deleting the 445 or 383 DICOMs that appear sequentially first in each stack of 60 (I think I said that...
And another small discovery: I can get all of the volumes to convert **independently** using dcm2niix. Most of them are 60 slices in the Z direction, but one is 59...
@neurolabusc Thank you for the wealth of helpful information! I will advocate for proper use of the Philips DICOMs, but I am not a part of the ABCD consortium anymore...
@oesteban I'm not sure. It looks like some hard-coded parameters are present in specific artefact noise generators: - https://github.com/Queen-Square-Analytics/automatic-quality-control/blob/main/src/qcs/artefacts/ghosting.py And this seems to default to ResNet101 weights> - https://github.com/Queen-Square-Analytics/automatic-quality-control/blob/main/src/qcs/feature_extraction/deep.py#L42 But...