ezaai

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ezaai calculate issue: temp directories being created read only, java errors out when temp files can't be deleted

3

I've been trying to run this software on a test dataset. I can convert my protein sequence files to ezaai databases, no trouble. But when I try to actually calculate...

samwichse

calculation issue java.io.IOException: Cannot delete file: /tmp/ezaai/78e2b9bcc9dd8cf6_tmp/8191412700641163904

1

Hi developers, I ran the program but got this error. [MAR 15 12:15:10] EzAAI |: EzAAI - v1.2.3 [Feb. 2024] [MAR 15 12:15:20] EzAAI |: Calculating AAI... [Task 1/484] org.apache.commons.io.IOExceptionList:...

caizhangbin

ERROR: invalid input file given

1

Hi, I installed Ezaai using conda. However, there is an error when running the command as shown below: Command: ezaai extract -i fasta/Ci.fasta -o db/seq_db -dev [MAR 13 17:12:16] EzAAI...

Joredb

calculation issue

3

Hello, I tried using EzAAI for a calculation. The first time, it worked without any issues, but I encountered an error on my second attempt. Can you explain what the...

994422

Coverage and Identity cut-off explanation

2

Hello everyone, I've changed the identity percentage cutoff (-id) to 0, 0.2, 0.3, 0.4 while keeping the coverage fixed at 0.5, but the number of matched counts and AAI remains...

lauraflows

How about eukaryotic proteins

4

Dear developer, I'm curious if ezaai is also suitable for AAI calculations between eukaryotic proteins, please note that proteins and not genomes are entered here. Looking forward your reply. Thanks...

neptuneyt

Sequence matched CDS

2

Hi all, I was wondering how I could obtain the sequence of the matched CDS between two genomes. Thank you in advance, Arancha

PenilCelis

AAI calculation error

11

I am trying to calculate AAI using EZAAI. I have already created the DB file from genome but when executing command for AAI calculation, programme is terminated in between. Below...

pkstranger

Error creating database

10

Hello, I am unable to see a .db file created using either extract or convert. I set up the same sample folder as the tutorial, with 10 of my genomes...

cliffbueno

`calculate` error when using `-p blastp`

1

Thanks for your help with the previous issue - I'm back with a different one! I'd like to use `blastp` for some AAI calculations. I used `conda` to install `blastp`...

bluegenes