emmannaemeka

hello, i also seem to have similar problem Found 432405 exon blocks. rascaf: blocks.hpp:556: void Blocks::GetAlignmentsInfo(Alignments&): Assertion `readCnt > 30' failed. /job_scripts/3643772: line 33: 55796 Aborted (core dumped) ${RASCAF}/rascaf -b...

Hi, I am having a similar issue. I have installed blast+ and legacy, tried sudo java -Xmx3000M -jar BRIG.jar. The error Error: Too many positional arguments (1), the offending value:...

java -Xmx30000M -jar BRIG.jar BLAST version 2.13.0+ Blast option /usr/local/bin/ Error message Error: Too many positional arguments (1), the offending value: /usr/local/bin/ Error: (CArgException::eSynopsis) Too many positional arguments (1), the...

It worked. I followed this Also, if you have blastn in your system default path, maybe you can try not specifying it (that's how I'm currently running my BRIG test)....

minimap2 -ax map-ont -t 28 ~/_pilon_2x.fa ~/long_read.fq > ~/racon1x.sam /racon -m 8 -x -6 -g -8 -w 500 -t 30 ~/long_read.fq ~/racon1x.sam ~/_pilon_2x.fa > flye_22_09_19.fa

Its surprising why it happens something similar was reported Because both polishing techniques alone failed to achieve BUSCO scores equal to or better than the published reference genomes, we then...

Yes the genome is *Candida albicans* SC5314 i also have another genome locally assembled i would like to generate karyotype file for. Can you get a program that can run...

Thanks email sent.

Am sure this will help a lot of people On Tue, 21 Jan 2020 at 9:56 PM, fomightez wrote: > That script UCSC_chrom_sizes_2_circos_karyotype.py > > as it is written won't...