Emma Hodcroft
Emma Hodcroft
It would be useful to be able to visualise how (total) sequencing numbers have changed over time in different countries. We already have this data in the [perCountryData.json](https://github.com/hodcroftlab/covariants/blob/master/web/data/perCountryData.json) file. This...
This is a minor thing, but bothers me sometimes now that in many places there are only 2-4 variants circulating... Is it possible to only show variants in the mouse-over...
Acknowledgements are generated even if the cluster is set to `"type": "do_not_display"` in `clusters.py` - we shouldn't generate acknowledgements for clusters that aren't actually on the webpage (acknowledgements are part...
This a draft PR to outline a JSON file format which would contain all information about the Variants & Mutations that are tracked on CoVariants, with defining mutations, to allow...
At the moment the Shared Mutations page pulls anything put in [`mutation_comparison.py`](https://github.com/hodcroftlab/covariants/blob/master/scripts/mutation_comparison.py) and displays it. At the moment to keep this useful but simple, only Spike mutations are put into...
At the moment only the 3 main Variants of Concern, plus 20B/S.484K are shown in the 'Shared Mutations' page. However, it would be nice to be able to add any...
Add more information about mutations in 'side-sausage' and in text, on mouseover. For example: - What is the corresponding nucleotide mutation for an AA change? - Is a nucleotide change...
Wish list: - [ ] (Emma & Ivan) Display table counts of sequences (information currently in TSV files) on each variant page - [ ] Related to ^ Figure out...
Add specific social media images to specific pages. See the instructions in PR #41 for how to do this!
Currently clusters.py takes mutations like so: ``` "mutations":{ "nonsynonymous": [ {'gene': 'S', 'left': 'S', 'pos': 98, 'right': 'F'}, {'gene': 'N', 'left': 'P', 'pos': 199, 'right': 'L'}, {'gene': 'ORF3a', 'left': 'Q',...