Emilio Palumbo
Emilio Palumbo
* more control on tool versions * process granularity * use biocontainers - [ ] #83
* use biocontainers, latest version: `1.3.3--pl5321h0033a41_7` - [ ] #82
* change `rsemSkipCI` parameters to `rsemCalcCi` * set it to `false`
Maybe better put `unspecified` as for read strand
They are always treated as `single-end` causing errors in some of the steps.
The pipeline allows to process data with different strandness within the same run. Many time all libraries in a dataset have the same strandness and we would need to (1)...