ekushele
ekushele
# nf-core/methylseq pull request This is a continuation-improved PR of this PR: https://github.com/nf-core/methylseq/pull/147 ## PR checklist - [x] This comment contains a description of changes (with reason) - [x] Ensure...
Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...
Hello, I'm trying to create a new bioconda recipe, [here](https://github.com/bioconda/bioconda-recipes/pull/44915) The tests fails, due to python version < 3. I specially specified python >3.6, so why conda ignores my python...
Hello, I tried the command from the manual, to print files with header: [bedtools unionbedg -i 1.bg 2.bg 3.bg -header](https://bedtools.readthedocs.io/en/latest/content/tools/unionbedg.html#header-add-a-header-line-to-the-output) but the output had only "chr start end" on the...
Hello, I'm trying to run ichorCNA, but get the error: ``` Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE Calls: getSeqInfo ... FETCH_ORDERED_CHROM_SIZES -> .order_seqlevels -> stopifnot Execution halted...
### Description of the bug Hi, I'm trying to run sarek, and I'm getting the following error: ``` ERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1)' Caused by: Not Found...
### Description of the bug Hi, I'm trying to run sarek with "mutect2" for variant calling. Pipeline completes successfully, but the folder "output/variant_calling/" is empty. It seems like process `MUTECT2_PAIRED`...
Hello, I'm trying to use `modkit adjust-mods` on a bam file. This bam includes supplementary mapping and optical duplicates reads. It seems like the `adjust-mods` skip those reads. Is there...