Error in .order_seqlevels(chrom_sizes[, "chrom"]) :

Open ekushele opened this issue 3 years ago • 0 comments

Hello, I'm trying to run ichorCNA, but get the error:

Error in .order_seqlevels(chrom_sizes[, "chrom"]) :
  !anyNA(m32) is not TRUE
Calls: getSeqInfo ... FETCH_ORDERED_CHROM_SIZES -> .order_seqlevels -> stopifnot
Execution halted

It worked until a month ago, and I found it crashes because UCSC updated there genome assembly (https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409252404).

What can I do?

Feb 28 '23 10:02 ekushele