Evan Kiefl

feature request: pseudo-continuous color ranges for numeric data

1

Is there a one-liner that I can use to get the color of a numeric value? For example, I want to make a color range from blue to red using...

_Hear ye, hear ye_ \*rings bell\* As the number of ways and manners in which anvi'o interacts with HMMs has grown and grown, the quality of our HMM code has...

## The need It's hard to search for specific functions, ligands, and gene ids (when there are many structures) within the interface ## The solution Add a search menu in...

From what I can tell, these should really be the same program. In fact, `anvi-get-aa-conts -c CONTIGS.db -o test --gene-caller-ids goi -o test1` and `anvi-get-codon-frequencies -c CONTIGS.db -o test2 --return-AA`...

[BUG] Prevalence is not correctly calculated in anvi-display-structure

1

This should be fixed by v7

## Short description of the problem `anvi-profile` fails on the IGD when using `--cluster-contigs`, yet creates a fully functioning profile DB ## anvi'o version master ## System info Please tell...

## Short description of the problem Pandas v1 is a very big milestone for the pandas developers, and when I upgraded my pandas to 1.0.5, the mock variability dataset fails:...

This is an important, yet an extremely hairy job that would require modifying much of the logic in the `Snakefile` and `__init__.py` files, which broadly assume paired ends.

Generating docs with GPT-4

7

Hey @merenlab/all I thought this was quite interesting and thought I would share. I've been exploring use cases for using chat-gpt and one thing I wanted to explore was how...

Markdown requires a space between the header # characters and the header, otherwise it looks really bad.