Evan Kiefl

> Above is the error where I think anvi-export-locus is not able to work properly with gene-calls that are not numbered numerically. By this I assume you mean that the...

If that is the expected behavior, then we have a bug, because the above code successfully makes a contigs db with external genes that do not have sequentially increasing numbers....

## Sorry Hey @michaelkyu, sorry about this. It seems that that parameter is a `pyANI` only parameter:  ## What to do Since its a pyANI parameter, this explains why...

Very interesting discussion. > So I would like to hear what the rest of you think about this, especially the when question :) As an outsider, relatively speaking, I agree...

Solving this error requires identifying a specific case in which things go bad. Now that I'm looking out for it, eventually I will find such a case, but it probably...

I like this. Certainly this would be very useful for users (`anvi-db-info`) and for programmers (with the `store_configuration` and `read_configuration` API). However, in my opinion this not necessarily storing a...

As an additional note, anvi-script-get-coverage-from-bam currently calculates coverage very fast for nt, or contig level, but not yet at the gene level. I haven't looked at the code, but you...

Thank you @ajkur. I had a scenario like this: ```python @njit def fun1(): for a in fun2(): # do something return @njit def fun2(): for i in range(100): yield i...

Lol you're right. Whoops, I meant to post it in this convo. Here it is: ## Prompt: I would like you to help me write some docstrings for a module...

It's annoying that the user prompt isn't formatted, but hopefully you get the idea. I'm just copy pasting the class 5-6 methods at a time. To answer your question, I...