ehennestad
ehennestad
We have occasional failures when running NoRMCorre on very sparse data or data with occasional very large movements. The error happens in the remove_boundaries function, and this is a proposed...
Hi, Thanks for some great tools. I just wanted to report that when I have both FaceMap an rastermap on the matlabpath at the same time, I receive the following...
The ecephys metadata for the ABO Visual Coding Dataset in the [S3 bucket](https://console.aws.amazon.com/s3/buckets/allen-brain-observatory/) are available as CSV files (i.e sessions.csv, probes.csv), whereas the ophys metadata is available as json (i.e...
convertPdf requires 3 inputs, but is called (in the if block "if fileInfo.isKey('eps')" ) with only two inputs, resolution missing, producing the following error: Not enough input arguments. Error in...
From the description for ElectricalSeries: https://github.com/NeurodataWithoutBorders/nwb-schema/blob/308c5d80d842f2e45cf25042cb12887ec8c7cbab/core/nwb.ecephys.yaml#L4-L7 It says the data can be 1D or 2D. However, the specification of the `data` dataset also suggests data can be 3D. https://github.com/NeurodataWithoutBorders/nwb-schema/blob/308c5d80d842f2e45cf25042cb12887ec8c7cbab/core/nwb.ecephys.yaml#L17-L26 Which...
### What happened? This issue related to the following points: 1. I can add a linked type directly to an NWB type/class without using the `types.untyped.Softlink`. Example (adding a device):...
### What would you like to see added to MatNWB? At the moment an instance of types.untyped.Set can appear to be empty, but using the `isempty` function returns false. ###...
From the matlab tutorial for calcium imaging: https://neurodatawithoutborders.github.io/matnwb/tutorials/html/ophys.html read_nwbfile.processing.get('behavior').nwbdatainterface.get('Position').spatialseries.get('SpatialSeries') should be read_nwbfile.get('processing').etc
## Motivation It was unclear how to create pixel_mask for PlaneSegmentation objects. This was raised in issue #572 ## How to test the behavior? ``` open ophys.mlx ``` ## Checklist...
### What happened? toTable method does not work on PlaneSegmentation objects ### Steps to Reproduce ```matlab % generate fake image_mask data imaging_shape = [100, 100]; x = imaging_shape(1); y =...