Chris Markiewicz

Alright. I've had a look at this. @GerardYu Thanks for your patience! There are some issues with the `B0Field*` specifications: ```console $ git grep B0Field sub-03/fmap/sub-03_magnitude1.json: "B0FieldIdentifier": "magnitude1_fmap", sub-03/fmap/sub-03_magnitude1.json: "B0FieldIdentifier":...

Okay, I think a problem is that the superdataset has a `git-annex` branch and apparently shares history with the subdatasets: ``` 󰅂 git show git-annex:remote.log | awk '/prefix/{for(i=1;i

I suggest that we get rid of the `git-annex` branch on the templateflow superdataset. There is no data to annex in it, and there is no plan for there to...

Some basic cleanup: 1) Remove the unused public-s3 remote. All S3 is public, just not everybody can push to it. 2) Remove the `public=true` option from existing s3 remotes. With...

Looks like actually a fairly manageable job. @kaare-mikkelsen, would you be interested in having a go at adding Windows support?

xref #61

I've confirmed this works on Fedora and conda-forge, as well as Ubuntu when stacked with #89.

So looked at this again. To be clear, you're suggesting a surface where a vertex is 1 if it's in the `bold_space-t1w_brainmask.nii.gz`, and 0 if not? I guess these ought...

Thanks. Seems like a problem with the sphinx index. For the moment: https://www.nipreps.org/niworkflows/master/api/niworkflows.func.util.html#niworkflows.func.util.init_enhance_and_skullstrip_bold_wf

Quick update: Running `inu_n4_final` on the truncated image did not resolve the problem. Since `atropos_wf` does its own `inu_n4_final` and `Atropos` succeeds on the `inu_n4` outputs, I'm passing `inu_n4` outputs...