Chris Markiewicz
Chris Markiewicz
We have some base classes to get going with FreeSurfer tools: https://github.com/nipy/nipype/blob/97ce446a9f55d72993b851436fdff7af57383be4/nipype/interfaces/freesurfer/base.py#L114-L118
Apologies for the slow response. First, I think your `_format_arg()` can be replaced by setting the `copyfile=False` metadata in `in_file`. (`copyfile=False` will symlink into the current directory if possible, `copyfile=True`...
Agreed. It includes the schema version in the JSON output, but we should be putting the validator version in, and then reporting that.
The FileTree is created here: https://github.com/bids-standard/bids-validator/blob/main/src/main.ts#L29 Which calls https://github.com/bids-standard/bids-validator/blob/9792807ecf36562781021ce7a1f29a12521220dd/src/files/deno.ts#L142-L158 Now, you can instead construct a file tree from a list: https://github.com/bids-standard/bids-validator/blob/9792807ecf36562781021ce7a1f29a12521220dd/src/files/filetree.ts#L29-L54 There is an example of using it in the...
Which validator are you using?
The current way to do this would be to provide a patched schema. We should provide a way to apply patches to the schema.
At this point, this amounts to ensuring consistent behavior across modalities.
Need a test case.
It does seem like it should be an erroring issue, since `.bidsignore` has a meaning but `.bidsignore/whatever` does not. It might be simplest just to have each file in the...
Does this persist in the latest release?