Eduardo Hirata-Miyasaki
Eduardo Hirata-Miyasaki
For now, I implemented some functions that help me get to registered, rechunked and cropped volumes. Such functions work with slurm, which are beneficial for our mantis datasets with >100Positions...
I like @ziw-liu suggestion to have it as iterable. Just to make sure, when we say 'pass a single FOV' this means the zarr contains only one level like the...
This is what I was using to do the cropping and rechunking. Two functions that might be useful and we can discuss wether they should be utilities that live within...
One interesting behavior is that if you minimize the napari window and then maximize, the contrast limit re-adjusts to float.
@ieivanov this is the PR I started trying to fix the convert to have iohub read the data with the additional axis.
I regularly use the shrimPy `update-scale-metadata` especially with Falcon datasets since we don't have a way to tell it that it's a 60x vs 20x objective when we swap them,...
@mattersoflight we don't need to change the previous configs because by default the Dataloader will be set to "0" the highest resolution if the parameter is not provided in the...
For the release, we will add some prediction notebooks first included in #94. We will iterate on the DL@MBL notebooks afterward.
#114 Closes this issue
I am having trouble seeing what is the added benefit of using `python -m viscy.cli.module [command]`. What is this enabling? Also, #114 does not rely on the CLI so you...