Edmund Miller
Edmund Miller
I have a feeling we need something like https://www.nextflow.io/docs/edge/dsl2.html#module-templates And then we can call a template that handles the file input params, or maybe something that just takes a samplesheet...
That was all that I was imagining the template would be is an anonymous workflow, that might hook it up to a samplesheet module or something. Your snippet might work...
I think it's even more relevant now that we've actually added subworkflows
Yeah, I think a `README.md` in the dir should be the move. It should get rendered by GitHub then!
> Should I wait till the tooling update is made or should I manually add it for this subworkflow? Manually add it!
I believe @ewels and others were opposed as it would break a lot of things. See https://nfcore.slack.com/archives/C0448VBG30R/p1664972715894999
Notes from yesterday (per @lescai): - input file format - Most frequent input format(s) is/are included (if several, alphabetical order) (updated at 5:30) - make sure it is in yml...
``` withName: DEEPTOOLS_BAMCOVERAGE_PLUS { ext.args = "--filterRNAstrand forward" ext.prefix = { "${meta.id}.plus" } } ``` For example fails silently
Alright this is ready to review. I've gone through all of the modules and added anyone in the `meta` file to the codeowners. If they didn't have a specific author,...
I think this would be a big boost for keeping things maintained. I think we could probably get away with a script to write the original one, then update it...