rkmh
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edawson
Classify sequencing reads using MinHash.
Running into a memory error after compiling on Linux centos `(params - t 4 -k 12 -s 2000` `double free or corruption (!prev): 0x00007f64a40008c0`
HiEric! I was recently recommended your program, and I am trying to figure out the best method to utilized and understand this process for my end goal. So I am...
I ran into the following error on Macos ``` cd mkmh && /Applications/Xcode.app/Contents/Developer/usr/bin/make g++ -O3 -std=c++11 -fopenmp -mtune=native -ggdb -c HASHTCounter.cpp -Lmurmur3 -L. -I. -Imurmur3 clang: error: unsupported option '-fopenmp'...
Right now, we only pass reads through filter if they match any of the reference genomes provided above a certain threshold. However, the inverse filter (where reads that match the...
As written above, I'd like to implement an option to require that all kmers in each reference sketch be unique.
As noted by Titus in [an issue](https://github.com/marbl/Mash/issues/27), Minhash sketches should be stable and cross-compatible between programs. It makes sense to fall into line with this convention. To this end, rkmh...