Erica Wood

This still needs to be addressed based on @acevedol's observations.

> Is this only for KG2, or is Sierra's thinking that using BiologicalEntity should be fine for anyone? > I think it would be best to start a discussion with...

I don't object.

As far as I can tell, KEGG is "pay to use" (see https://www.pathway.jp/en/academic.html). Thus, we can't ETL KEGG directly without paying for a license. The parts of KEGG that are...

@chunyuma Are you looking for KEGG pathways or KEGG compounds? If it is KEGG compounds, the new Reactome ETL should provide some cross references to them. However with #1125, the...

For that reaction, there is an info page on it here: https://pathbank.org/lims#/reactions/108552 (you have to create an account or login as a guest to view it). It seems to have...

These are the different sections in the owl files we currently use: ```json { "bfo.owl": [ "Annotation properties", "Classes" ], "bspo.owl": [ "Annotation properties", "Object Properties", "Classes", "Individuals", "General axioms",...

Here is that map pivoted to show which sources include each section: ```json { "Annotation properties": [ "bfo.owl", "bspo.owl", "chebi.owl", "cl.owl", "ddanat.owl", "doid.owl", "efo.owl", "ehdaa2.owl", "fma.owl", "foodon.owl", "genepio.owl", "go-plus.owl", "hp.owl",...

These are the keys in the `owl:Class` terms: Key | Percentage of `owl:Class` Terms with Key -- | -- rdf:about | 0.9973332283 rdfs:label | 0.9730753518 rdfs:subClassOf | 0.9541165642 oboInOwl:id |...

KG.10.1pre successfully built without ontobio, so I am closing this issue.