Erica Wood

Results 183 comments of Erica Wood

I am curious how many nodes directly below these nodes are getting their class and if they seem like they could obviously be categorized differently (since their descendants would then...

This should especially happen if a URL is in the `use_to_bidirectional_mapping` section. This doesn't need to happen for `use_for_contraction_only` - there is no expectation that the URLs are Biolink standard....

From 6677636, we know that ``` WARNING: CURIE_URL NOT SAME AS BIOLINK URL for CHEMBL.MECHANISM - KG2: https://www.ebi.ac.uk/chembl# , Biolink: https://www.ebi.ac.uk/chembl/mechanism/inspect/ WARNING: CURIE_URL NOT SAME AS BIOLINK URL for DGIdb...

It took a lot of commits, but this seems to be working now.

In the Biolink model, this is how those TUIs are categorized: - `T129`: `biological entity` (#286) - `T116`: `polypeptide` - `T121`: `drug` One of the ancestors of `drug` is `chemical...

This node also has a bad IRI, which we want to fix. The actual node is [here](https://www.kegg.jp/entry/map05218). Within KEGG, it is also called "Melanoma". We may want to survey the...

Here's a list of all of the KEGG Pathway names. It does seem like a lot of them would benefit from "pathway" being appended at the end. ``` [ "Biotin...

~~How will we be compliant with Biolink 3.5.0 by July 7 when it hasn't been released yet?~~ Apparently, it is being released on June 30th. Do we have an idea...

Where were these seen outside of KG2? I am not seeing a "may treat" relation type on the RxNorm list of relationships [here](https://www.nlm.nih.gov/research/umls/rxnorm/docs/appendix1.html) (or even a "treat" relation type for...

What might this look like? Neo4j assigns numeric IDs to nodes and edges. How would we ensure that these persisted across builds?