emilia
emilia
Error running: pyscenic grn \ --num_workers 20 \ --output adj.tsv \ --method grnboost2 \ PBMC10k_filtered.loom \ hs_hgnc_tfs.txt ``` (...) distributed.worker - WARNING - Memory use is high but worker has...
Having difficulty converting h5Seurat to Anndata. Had similar issues to #27 in the SaveH5Seurat step(), resolved by FindVariableFeatures() suggestion. Now having issues with the Convert() step: ``` Convert("data/ut_seurat.h5Seurat",` dest =...
Cannot merge Seurat object list get the following error: ``` entry.seurat
Error running peakAnnoEnrichment() ``` > motifs.neg sessionInfo() R version 4.3.3 (2024-02-29) Platform: x86_64-apple-darwin20 (64-bit) Running under: macOS Sonoma 14.6.1 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0 Random...
Seem to be able to run addPeak2GeneLinks successfully (see log file). `huh6.filt.project peaks.to.gene nrow(peaks.to.gene) NULL ``` Or if I try to run with returnLoops = TRUE I get an error:...
Sorry it may just be because I am still unfamiliar with this package, but I can't seem to get it to work on my test data. I can't get rid...