eberdan

the correlation coloring is the reverse of what the mind (my mind) expects. Should be redone here with the reverse color scheme. https://github.com/hbctraining/DGE_workshop_salmon_online/blob/master/lessons/03_DGE_QC_analysis.md

count normalization figure

1

Figure with X, Y, and Z genes is misleading as Z has the fewest reads but is the longest. As this figure is only designed to visualize differences caused by...

extra pink mean dot in the first figure here: https://github.com/hbctraining/DGE_workshop_salmon_online/blob/master/lessons/04a_design_formulas.md The pink dot all the way to the right should be removed.

predict_metagenomes.py error

9

Hi, Thanks for this pipeline! I am running it and having trouble with the predict_metagenomes.py step. When I the normal predict_traits.py command you recommend and then add the KEGG I...

Decision tree?

2

Might be good to start with a decision tree of when you want to use scRNA, bulk RNA, bulk sorted, insitu hybridization, etc

python module

1

I went through the python module and had a number of edits, notes, and questions. These can all be found in my version of the colab file: https://colab.research.google.com/drive/1Zo-Q1uHUcPsjPCT-gUKo2A5m__eYm4VP?usp=sharing

Make all the code in one chunk for them to copy and paste? Will will fix!

Current link is broken. Should be https://hbctraining.github.io/Training-modules/Accelerate_with_automation/lessons/arrays_in_slurm.html

The figure has scratch3 which should be changed to just scratch