Bryn Lloyd

I see the training scripts resample the images to a fixed shape (e.g. `175 ** 3`). Are the datasets used in the uni/multiGradICON models preprocessed additionally, e.g. cropping/resampling/masking/etc to prepare...

Thanks for your kind help.

Did you measure the quality? I think with node relocation you cannot really improve the inner tets much at all. The aspect ratios wont change. The result looks quite reasonable...

It seems the shape variation accounts for the arm length in higher modes. After increasing `num_betas` to > 60 I started to get the arms/hands to match. Sorry, should have...

Have a look at my little package [sitk-cli](https://github.com/dyollb/sitk-cli) . I do something very similar, just for images. The function [make_cli](https://github.com/dyollb/sitk-cli/blob/4844349d5276ae1c2df4fa3b5ee49dc98f654e46/src/sitk_cli/lib.py#L10) replaces arguments of type image with pathlib.Path and does loading/saving....

I tried to run on my windows machine but cannot reproduce (yet) with following dependencies: [requirements.txt](https://github.com/user-attachments/files/21655762/freeze_ok.txt) test output: ```cmd (.venv) D:\lloyd\dev\nnUNet-fork>python nnunetv2/tests/integration_tests/run_nnunet_inference.py nnUNet_raw is not defined and nnU-Net can only...

I tried installing the requirements posted by @hari3100 with the current nnunetv2, but there are many dependency conflicts. But removing stuff like monai, which is not required or [niidcm](https://github.com/tomaroberts/nii2dcm), which...

Testing with torch==2.4.0 (using requirements as [above](https://github.com/user-attachments/files/21660046/freeze_bad.txt)): The gaussian seems to produce a tensor with infinite values ('inf'): If you normalize the 'gaussian_importance_map' using numpy at least the gaussian does...

the wget links don't work

@sizmailov FYI. pybind11 added support for native enums (enum.Enum derived) two weeks ago: https://github.com/pybind/pybind11/pull/5555 The old `py::enum_` has been marked as [deprecated](https://github.com/pybind/pybind11/blob/b70b8eb332fadf55d7e22b492da0e954c1a4fcb7/docs/advanced/deprecated.rst#L13). I haven't tried yet, but maybe this issue...