dyngen
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Simulating single-cell data using gene regulatory networks 📠
Hello, I have run into an error when using the trying to simulate larger datasets with the branching backbone. The smallest dataset I have had this issue with so far...
Dear all, I tried running dyngen on my Mac with OS 11.5.2. However after installing dyngen following the instructions and then running one of the example backbones Rstudio crashes completely....
Hi. I've been trying to test out a trajectory alignment method using dyngen datasets with different kinetics and i wanted to look at the correlation of the cells from the...
Thank you for providing an excellent simulator. I have started scRNA-seq data analysis, and I have two questions about using this simulator to compare candidate methods for benchmarking. 1. Is...
Hi, How can I activate ```kinetics_noise_none()``` or have the gene expressions without noise? https://github.com/dynverse/dyngen/blob/5d08b2ebbfe0089052068d97f06a9543cb7042a9/R/6_simulation.R#L20 Thanks a lot!
Hi, Thanks @rcannood for your tool. I following your tutorial [here](https://dyngen.dynverse.org/articles/getting_started.html): And I get the following error when running ```generate_gold_standard(model) ``` ``` ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library...
I want to generate single-cell simulation data with different levels of noise and compare their PCA dimensionality reduction results. The result I hope to obtain is that after increasing the...
Hi! Thank you for your perfect method. I found many default backbones in the official tutorial. But how can I generate data with just a high dimensional normal distribution? In...
