Daniel Vera

icon indicating a website link https://danielvera.org icon indicating an email [email protected]

icon company hms.harvard.edu ; silico.org icon location Boston icon location Computational Biologist interested in aging, chromatin, gene regulation, genomic technologies

Results 4 comments of Daniel Vera

sesameDataCache() ExperimentHub Caching fails

> ExperimentHub() Error in `collect()`: ! Failed to collect lazy table. Caused by error in `db_collect()`: ! Arguments in `...` must be used. ✖ Problematic argument: • ..1 = Inf...

clodius aggregate: NameError: global name '_bigwig' is not defined

It worked for me when running it in the higlass container (which has it installed).

clodius aggregate: NameError: global name '_bigwig' is not defined

Maybe try pulling v0.2.63, which is what I'm using.

bcftools consensus: Making a chain file to convert coordinates BACK to input reference

-c will create a chain file, but in the opposite direction I'm interested in. I'd like to go from new->old, not old->new.