dudcha

Use Juicebox assembly tools. You can find useful instructions on how to interpret contact maps in the Genome assembly cookbook hosted on dnazoo.org/methods. Best, -OlgaOn Jul 22, 2023, at 3:37...

Please consult Genome Assembly Cookbook on dnazoo.org/methods for instructions on how to use Juicebox Assembly Tools. -OlgaOn Nov 24, 2022, at 2:10 AM, Zuoying Xiahou ***@***.***> wrote: Hi! I have...

Hi all, Please see this discussion over here: https://groups.google.com/g/3d-genomics/c/OoCwQdL6yX0 You can exit 3d-dna at the point which is causing the problem and see if running with an updated jar will...

Hello Oriane, Dandan, The errors is caused by the following line: type java >/dev/null 2>&1 || { echo >&2 ":( Java is not available, please install/add to path Java to...

No. Type the command in the terminal or submit the line as a separate job to understand why it is not running. > On May 22, 2023, at 10:52 AM,...

This is not sufficient description to offer any advice I am afraid. I would suggested providing a more thorough report. I would also suggest checking that your fasta does not...

I suspect you have issues with your alignment. If you used Juicer I suggest you take a look at the logs, and check the part where you generated restriction enzyme...

Hi Aomei, This is not enough for me to diagnose. Please attach the full output including stdout and stderr and the list of files that did get generated. Did the...

Hey Aomei, There appears to be no attachment, sorry. Olga

Hey, I looked though the log: it looks fine to me. Something went wrong with the chrom boundary detection, but you should have no trouble checking via JBAT. If you...