dudcha

Hi, Actually never mind: I see another error upstream that is more important: :( Assembly file does not match cprops file. Exiting! I will need to investigate this. Do you...

Hi, I am going to try to roll out an updated version which includes some changes to seal I have been meaning to put out for a while: let us...

Hi, Try the 180922 branch: it has some bug fixes in seal that might resolve this issue. You can test if the problem gets resolved by running the -s seal...

Hey Kai, There were a few more small commits concerning this from today. Please pull and run -s finalize. Thanks, Olga

Hey Kai, Since this is not a bug, if you can, please post to aidenlab.org/forum.html where we do our best to offer general user support. We have a few threads...

Hi atigano, I am not sure which same issue you are referring to in this thread. One (turns out) common reason for the "not matching" error may be carriage return...

Hi Rahul, I do not know if it relates to you, but some issues with finalize output may be related to SIGPIPE signal handler, see discussion here: http://aidenlab.org/forum.html?place=msg%2F3d-genomics%2FcqAmJHbXCzE%2FeaXK63syBwAJ I cannot...

Hi zijiangyang, Are you running after review? Note that an earlier version of JBAT on Win machine added ^M carriage return which could cause this (https://github.com/theaidenlab/3d-dna/issues/23#issuecomment-464373556). Given your comments it...

Hello Patrick, Moretti much all of these issues boil down to people not using the right fasta or the right assembly when running post-review. Please check your input. Olga

Usually this happens when you pass the wrong edit file after JBAT. Are you running this after JBAT? -Olga