dudcha

Earl, This is such unusual behavior (in that I had not have it reported before that I think I won’t be able to say anything unless I try to reproduce....

Earl, If you could host and send credentials for access to [email protected], that perhaps would be best. Thanks! Olga > On Jul 15, 2019, at 9:46 AM, EarlyEvol wrote: >...

Earl, One thing I can see already that you don't have 3d-dna running at all: if you open .0.hic file it looks just like just visualizing the draft (and you...

Indeed the log is fine: took the identical number of iterations as I just ran, so it was doing someting. But the output file is different. Just in case, make...

Hi Tom, Thanks for posting. It looks like a very big contig: just try giving it a bit of time. This is a weird behavior that needs to be traced,...

If your contig is already a debris contig editing is not allowed. Check the name to see if it has the :::debris label. Best, Olga > On Oct 24, 2019,...

Since you are writing this as part of the 3d-dna thread I am assuming you are trying to visualize a draft assembly. Are you following the instructions on page 5...

3D-DNA does not take “pairs" as input. Please see Genome Assembly Cookbook for instructions on how to use the tools. -Olga > On Apr 5, 2022, at 2:12 PM, ddelgadillod...

The pair file is not our file format, I do not know it’s structure and a such cannot help with the conversion. Please see the cookbook for instructions on how...

Hi, Can you please check your bash version: it needs to be >=4. Best, Olga > On Sep 20, 2018, at 8:12 AM, kai wrote: > > command > bash...