dittoSeq

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Multi-gene visualization in a single DimPlot with blended color

1

Greetings, really nice work, thank you very much for sharing it with the community. I would like to ask the developers about a particular functionality of DimPlots, that could be...

mitsiask

`dittoPlot()`s nolonger render as intended when `do.hover = TRUE`

1

There have always been some differences after plotly conversion, but it's definitely gotten worse than before. (Before: seemed to just be that boxplots always showed outliers in the past, and...

dtm2451

Consider using `anno_mark` when `complex=TRUE` and `highlight.features` used in dittoHeatmap

8

This prevents labels from overlapping but would require a bit of re-working how the `pheatmap` call is made. https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#mark-annotation

j-andrews7

dittoHeatmap

4

Hallo and thanks for the great package! I wanted to create a heatmape, here is my code: dittoHeatmap(sce_data, genes = markers, assay = "exprs", heatmap.colors = viridis(100), annot.by = c("FastPG_clusters",...

Aminach1

dittoHeatmap with pale heat map colors

2

Hi, Thanks for that great package. Just started to explore it. When I use `dittoHeatmap` on Seurat objects it runs without errors and produces the expected output in terms of...

kmakat

Add neighborhood diversity calculation and plotting

2

This PR adds a new functionality and plotters to go with it: - calculation of diversity within cells' nearest neighbors Motivation: Plotting such data can be VERY useful for batch...

dtm2451

Adds capabilities: 1. Use a custom function as `color.method` for discrete `color.var`-data 2. Use a custom function that outputs either numeric or discrete type outputs for discrete or numeric `color.var`-data....

dtm2451